PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu061767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 340aa MW: 39110.9 Da PI: 6.1778 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 9.1e-15 | 13 | 51 | 5 | 43 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 n+ vtf kRr+g+ KKA+ELS+LC++++ +i++++ Oeu061767.1 13 NHKACRVTFEKRRKGLEKKAYELSTLCGVKIGMILYGPA 51 555668******************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence |
MGRAKLTLEL RNNHKACRVT FEKRRKGLEK KAYELSTLCG VKIGMILYGP AEGDEPVEPT 60 IWPENREEIE NLISSYKKRS DDDCRQRTYD LSFFFQNKVK KVQEELVKMR NKNIEVKYPT 120 WDASYDNLTY DELKHFSSLL QAKIENVKSR INLMNQNQMN AQSIQENIYV YQSKLYYQQQ 180 QSLMPHGSFN MADPRLMMMP MNDGASSSSS NYIYNAEDTH GDYTYSNGGE IRGNYIGSEI 240 PVSYICNAED TYGNCTYSNG GEIRGNYINS EIPVSHGLGF GVLDNVPFSN AEMCSYLPNL 300 YPMPQYSQFP VFSSPTLQLQ AADTENYRRR HDFQLHNPM* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-20 | M-type_MADS family protein |