PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu061426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23331.5 Da PI: 7.9629 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 14 | 115 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++ Oeu061426.1 14 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPVADRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVAYLQAQLMQV 111 7*************************99********************************************************************99 PP DUF260 98 keel 101 k++l Oeu061426.1 112 KAQL 115 9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MATGTGTGTG TGTPCGACKF LRRKCAADCI FAPYFCSEQG PARFAAIHKV FGASNVSKLL 60 LHIPVADRCE AVVTIAYEAQ ARIRDPVYGC VSHIFALQQQ VAYLQAQLMQ VKAQLAQNLI 120 ESRNQENQWP GCNINGGMAS SFQNFPTNYM NSSSISPQSS LDSIDHHHGN ISMQDFESIR 180 DEVTLQPYCS KKRHSQTDLS ELQALALRMM KH* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-56 | LBD family protein |