PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu060675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19357.9 Da PI: 10.3382 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 9 | 50 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k ien++ r+ +f kR+ngilKK +ELS+LC+++++ +i+s+ Oeu060675.1 9 KYIENNTDRKSSFKKRKNGILKKVQELSILCGIDACAMIYSP 50 579*************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MTRRKIMLKY IENNTDRKSS FKKRKNGILK KVQELSILCG IDACAMIYSP YEAEPFVWPS 60 PLVTQQIISR FQALPEAEKT RKMFDQVSSI DQRIRKSRVR IQKLQRDNRI KDTEILMHQC 120 MAGFTSLQNV SLSHLIEMGC LADQKMRDIA IRMKELQTNG MVCICK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKIMLKYIENNTDRKSSFKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-36 | M-type_MADS family protein |