PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu060662.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 160aa MW: 17892.2 Da PI: 8.9186 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 2.9e-11 | 60 | 82 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f+rtG C+yGd+Ck+ H++ Oeu060662.1 60 VCNRFLRTGSCQYGDSCKYYHPK 82 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MPLGKYYCDY CDKQFQDTPF ARRRHIQGVH HQRAKALWYD SLRSQNLAQI HDPDSVGKGV 60 CNRFLRTGSC QYGDSCKYYH PKQNVPSINT QGLAGTSFMK NVGQEGISRT QLDGEASMPG 120 KYYSTMLRNQ MGTSVGNLPP SLWPPPEGGY PPLPFVDWG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-30 | C3H family protein |