PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu057371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 89aa MW: 9870.49 Da PI: 8.5063 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.8 | 1e-20 | 4 | 86 | 3 | 82 |
DUF260 3 aaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 ++C+vlrr+C+++C+l+p++ p++q++++ +v k+FG+s ++ ++ a+pe++r +++ l++e + r+ +Pv+Ga+g++++ Oeu057371.1 4 NSCRVLRRGCSEQCILRPCLdwiqtPQAQANATLFVSKFFGRSDLMDFIFAVPESKR--LFQPLMFETCGRTLNPVNGAMGLLST 86 78*************************************************999987..89********************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence |
MSYNSCRVLR RGCSEQCILR PCLDWIQTPQ AQANATLFVS KFFGRSDLMD FIFAVPESKR 60 LFQPLMFETC GRTLNPVNGA MGLLSTGS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-41 | LBD family protein |