PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu054190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22364.6 Da PI: 7.7158 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.1 | 3.2e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ a+q ++ +v+k+FG++ ++++++a+p ++r+++++sl+yeA r+ +Pv+Gavg++++++++++q++++ Oeu054190.1 2 SCNGCRVLRKGCSENCILRPCLqwienSAAQGYATVFVAKFFGRAGLISFISAVPVNQRPAVFQSLLYEAAGRTVNPVNGAVGLLSTGNWHVCQAAVD 99 6*********************99988889999*************************************************************9988 PP DUF260 94 lal 96 + l Oeu054190.1 100 TIL 102 755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIENSA AQGYATVFVA KFFGRAGLIS FISAVPVNQR 60 PAVFQSLLYE AAGRTVNPVN GAVGLLSTGN WHVCQAAVDT ILQGGTLRPI SEFVSGPPEL 120 DELQDPSLNL RLKVQKHRRL PDELGNLTEV ADLDLNLTTG FESKNLSSLF EKRRLGSPSM 180 NSEESGTTTC ENQLPTKPKL LNLFN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 9e-72 | LBD family protein |