PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu053808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 29161.1 Da PI: 9.7434 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.1 | 3.9e-15 | 182 | 206 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg Oeu053808.1 182 KTELCNKWQQTGTCPYGDHCQFAHG 206 8***********************8 PP | |||||||
2 | zf-CCCH | 18.1 | 4.8e-06 | 219 | 244 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte Cr + G +C+yG rC+F H+ Oeu053808.1 219 YKTEVCRMVLN-GdHCPYGHRCHFRHS 244 9******9999.55**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MIEQHHTVFS HLQKTAKQVQ SLRQDNVNLK MANIDLNHRL KLLVNSTSSF GLSGLVPGSS 60 SGWDPIVDGL GKMSLGGEDG PGEKEEGENE VTAAFSQGHS TSPKSVVDLG RVGGSGEERI 120 SLPKSISVRS SGYLKTARAV GMSNGGRVKA QDRTKTQRVY VSGGKKVEEA LELEVYNQGM 180 HKTELCNKWQ QTGTCPYGDH CQFAHGIKEL RPVLRHPRYK TEVCRMVLNG DHCPYGHRCH 240 FRHSLTDQEK LMRSMNTRLL KPR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-61 | C3H family protein |