PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu053535.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 385aa MW: 41506.5 Da PI: 8.9897

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu053535.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	7e-06	33	46	14	27
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C++G++C+FaHg+ Oeu053535.1 33 GCRFGEKCRFAHGE 46 6***********96 PP
2	zf-CCCH	17.6	7e-06	216	229	14	27
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C++G++C+FaHg+ Oeu053535.1 216 GCRFGEKCRFAHGE 229 6***********96 PP
3	zf-CCCH	26.9	8.1e-09	353	375	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +fa+ G C +G+rC+FaH+ Oeu053535.1 353 KKMCENFAK-GKCTFGERCHFAHS 375 678****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MAKLGSNAAV PFTDGPPRIV KTKLCSNINT PEGCRFGEKC RFAHGEMELG KPMGPGHEDS 60 RAMGSTPVAN FGSSATAKIS IDASFAGTII GKNGVNSRQI CRQTGVKLSI KDHEVDPNQR 120 NIELEGSFDQ IKEASAMVRE LIMNISSFPG RAEKPMGPFG QGTHSFLILI GVYHVPNHMK 180 CTDFIALKCN AAVPFTDGPP RIVKTKLCSN INTPEGCRFG EKCRFAHGEM ELGKPMGPGH 240 EDSRAMGSTP VANFGSSATA KISIDASFAG TIIGKNGVNS RQICRQTGVK LSIKDHEVDP 300 NQRNIELEGS FDQIKEASAM VRELIMNISS FPGRAEKPMG PFGQGTPPNN FRKKMCENFA 360 KGKCTFGERC HFAHSASELR KPFV*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MAKLGSNAAV PFTDGPPRIV KTKLCSNINT PEGCRFGEKC RFAHGEMELG KPMGPGHEDS  60
RAMGSTPVAN FGSSATAKIS IDASFAGTII GKNGVNSRQI CRQTGVKLSI KDHEVDPNQR  120
NIELEGSFDQ IKEASAMVRE LIMNISSFPG RAEKPMGPFG QGTHSFLILI GVYHVPNHMK  180
CTDFIALKCN AAVPFTDGPP RIVKTKLCSN INTPEGCRFG EKCRFAHGEM ELGKPMGPGH  240
EDSRAMGSTP VANFGSSATA KISIDASFAG TIIGKNGVNS RQICRQTGVK LSIKDHEVDP  300
NQRNIELEGS FDQIKEASAM VRELIMNISS FPGRAEKPMG PFGQGTPPNN FRKKMCENFA  360
KGKCTFGERC HFAHSASELR KPFV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-50	C3H family protein