PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu053511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 557aa    MW: 62410.6 Da    PI: 4.9193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu053511.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-10238260426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+f+++tG Ck+G+ Ck++H 
  Oeu053511.1 238 EDCSFYMKTGSCKFGSGCKYNHR 260
                  89********************5 PP

2zf-CCCH26.31.3e-08286307526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++++ +G CkyG  Ck+ Hg
  Oeu053511.1 286 ECKYYLTSGGCKYGKACKYYHG 307
                  7********************9 PP

3zf-CCCH352.4e-11330355227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C++++r G CkyG +C+F+H++
  Oeu053511.1 330 GETNCPYYMRHGSCKYGTNCRFHHPE 355
                  6789********************96 PP

4zf-CCCH30.46.6e-10466492127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+ff++tG Cky ++CkF+H++
  Oeu053511.1 466 PGEPECSFFLKTGDCKYKSNCKFHHPK 492
                  5799*********************96 PP

5zf-CCCH30.18.2e-10515539226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C +++++G+CkyG+ CkF H+
  Oeu053511.1 515 DQPICTRYYQYGICKYGPGCKFDHP 539
                  689*********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MGSASSVIEK PQNGNLGLGL MNPESTPIDP TSDQRGVKDV SDSENAPVER SDLPKGIEEE  60
VKEKAVEEEE VKLRDTIERE IHQLTLERAE IEAAWKKGPG LNGDFKEGNE IKTVKNENAD  120
EEKDVEFTVK KKNEAAQEES HGLNGDCKEG NEVKTTENEN ADEEKEVEYT VNENRDEEKD  180
GHGVQNWKEE DRNEGYDENE SSDEEEGEGE PVKVTVKGGG NSEFKTRRSQ YPMRPDAEDC  240
SFYMKTGSCK FGSGCKYNHR PGRKNQDVKE RPNGGEGNPE RAGQIECKYY LTSGGCKYGK  300
ACKYYHGTRK SSISSPILEF NFLGLPIRPG ETNCPYYMRH GSCKYGTNCR FHHPEPTEET  360
EGDSPFEYSN GGSLPPQAFS SSPTTSWSSP RASNETALFV PSMLPTTQVV PSPNPEWNGY  420
QAAPYPTSER SLPTPPAFSM NKIPTSMNFP IQHQQEMVTE DYPERPGEPE CSFFLKTGDC  480
KYKSNCKFHH PKRRISKPKA NQFSLNDKGL PLRPDQPICT RYYQYGICKY GPGCKFDHPA  540
NFAVSQPPYE RPPFNS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-107C3H family protein