PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu053511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 557aa MW: 62410.6 Da PI: 4.9193 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 238 | 260 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G+ Ck++H Oeu053511.1 238 EDCSFYMKTGSCKFGSGCKYNHR 260 89********************5 PP | |||||||
2 | zf-CCCH | 26.3 | 1.3e-08 | 286 | 307 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ +G CkyG Ck+ Hg Oeu053511.1 286 ECKYYLTSGGCKYGKACKYYHG 307 7********************9 PP | |||||||
3 | zf-CCCH | 35 | 2.4e-11 | 330 | 355 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++r G CkyG +C+F+H++ Oeu053511.1 330 GETNCPYYMRHGSCKYGTNCRFHHPE 355 6789********************96 PP | |||||||
4 | zf-CCCH | 30.4 | 6.6e-10 | 466 | 492 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Cky ++CkF+H++ Oeu053511.1 466 PGEPECSFFLKTGDCKYKSNCKFHHPK 492 5799*********************96 PP | |||||||
5 | zf-CCCH | 30.1 | 8.2e-10 | 515 | 539 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++++G+CkyG+ CkF H+ Oeu053511.1 515 DQPICTRYYQYGICKYGPGCKFDHP 539 689*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence |
MGSASSVIEK PQNGNLGLGL MNPESTPIDP TSDQRGVKDV SDSENAPVER SDLPKGIEEE 60 VKEKAVEEEE VKLRDTIERE IHQLTLERAE IEAAWKKGPG LNGDFKEGNE IKTVKNENAD 120 EEKDVEFTVK KKNEAAQEES HGLNGDCKEG NEVKTTENEN ADEEKEVEYT VNENRDEEKD 180 GHGVQNWKEE DRNEGYDENE SSDEEEGEGE PVKVTVKGGG NSEFKTRRSQ YPMRPDAEDC 240 SFYMKTGSCK FGSGCKYNHR PGRKNQDVKE RPNGGEGNPE RAGQIECKYY LTSGGCKYGK 300 ACKYYHGTRK SSISSPILEF NFLGLPIRPG ETNCPYYMRH GSCKYGTNCR FHHPEPTEET 360 EGDSPFEYSN GGSLPPQAFS SSPTTSWSSP RASNETALFV PSMLPTTQVV PSPNPEWNGY 420 QAAPYPTSER SLPTPPAFSM NKIPTSMNFP IQHQQEMVTE DYPERPGEPE CSFFLKTGDC 480 KYKSNCKFHH PKRRISKPKA NQFSLNDKGL PLRPDQPICT RYYQYGICKY GPGCKFDHPA 540 NFAVSQPPYE RPPFNS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-107 | C3H family protein |