PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu053261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 22633.5 Da PI: 9.5893 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.9 | 3.1e-19 | 22 | 65 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n+ n qvtfskR g+lKKA+EL++L++aev +i fs++gk Oeu053261.1 22 KIGNEKNLQVTFSKRHSGLLKKASELCTLTGAEVGMIFFSPSGK 65 799****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MSSSSQASSR KGKGRQKVAM EKIGNEKNLQ VTFSKRHSGL LKKASELCTL TGAEVGMIFF 60 SPSGKPFAFG HPDVNTVADR FLTGNTRVLN HSEKVVQVYR SEKIIQQNLE LTINEDVIEA 120 EKRRQEELEE KKKGSQYSFP RPIEELSYEE LVQLRESYAK FIQDVAVETE KHKSGLVSPH 180 LHGTKPDSGG GKDFSFAAGA SSSK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-30 | M-type_MADS family protein |