PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu052786.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25887.6 Da PI: 6.3007 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.7e-37 | 34 | 135 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCkvlrrkC +Cv+ap+f ++q +++fa+vhk+FGa+nv+kll ++p + ++da+ ++ yeA+ar++dPvyG+v++i +lqqq+++l++el+l+ Oeu052786.2 34 PCGACKVLRRKCIIECVFAPHFGSDQgAARFAAVHKVFGARNVSKLLLHIPANWQHDAVVTISYEAQARLSDPVYGCVSTIIALQQQVASLQEELSLV 131 7***********************9989********************************************************************** PP DUF260 98 keel 101 +++l Oeu052786.2 132 QTQL 135 9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MDGSQGDGTS RNRRKGSGKR AEMATGSPRP LNAPCGACKV LRRKCIIECV FAPHFGSDQG 60 AARFAAVHKV FGARNVSKLL LHIPANWQHD AVVTISYEAQ ARLSDPVYGC VSTIIALQQQ 120 VASLQEELSL VQTQLINSRY AMVNALQNSP SQPQHHQQQH VSVLQPAYSN TSASNNNLIN 180 INNFSTTTSL EQTAAPSNSL EPSRRTFPSG QDDEEEEEEE DDESRDPIAF TNQIFH* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-67 | LBD family protein |