PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu052268.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22791.9 Da PI: 6.5526 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3.1e-18 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ k+ qv+fskRr+g++KKA E LC+++va++i s+ +k++++ Oeu052268.2 20 KIDKKTSLQVSFSKRRKGLFKKAAETRLLCGTDVAIVIQSPGNKFFTF 67 69999******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MSNGITEKKT KGRRKIEIQK IDKKTSLQVS FSKRRKGLFK KAAETRLLCG TDVAIVIQSP 60 GNKFFTFGEP SVESILNRWQ FVDDAHNPVV EEMGKSEREF WWVNENLERM ELRELGSFEE 120 ILTRLRDDVN ENLERMELRE LGAFEEILTG LRDEVSNRAS HNPVVEEMGK TEREFCGSMK 180 TWKEWNCANS ECLRR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-24 | M-type_MADS family protein |