PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu050388.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 319aa MW: 36073.4 Da PI: 6.8358

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu050388.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.3	3.2e-15	240	265	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++++G+C+yGd+C+FaHg Oeu050388.1 240 FKTELCNKWQESGECPYGDNCQFAHG 265 79***********************8 PP
2	zf-CCCH	19.8	1.4e-06	278	302	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ +C+yG rC+F H Oeu050388.1 278 YKTEVCRMVLAGDICPYGHRCHFRH 302 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MQENNSSSEA LTGSSTSAVS LQRFTSTNPF LSPTSPTYLN PNPYRYSTLF PQNYSPNSPS 60 ETASFDGGDI AATEESLHEA SRILEYQQLY NRHTVCLARL HEYINEVDSL RCENNSLRLS 120 NADLTRRLTL LVNQNCLLSD FNRLNIVPSP TVSFPTYATH VTSSQPLIEE NHMQRTPERV 180 TIPKSISVRS SGYLKTRMDQ DVTRQQVAGE PGLASQRVYV PGSKREEEAL EFEVYNQGMF 240 KTELCNKWQE SGECPYGDNC QFAHGIKELR PVIRHPRYKT EVCRMVLAGD ICPYGHRCHF 300 RHALTEQERL MAMAPAPR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	9e-74	C3H family protein