PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu049999.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 574aa MW: 63232.1 Da PI: 6.2386

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu049999.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	181	201	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd+C++aHg Oeu049999.2 181 PCPDFRK-GACRRGDTCQYAHG 201 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MVSRQMVLLH RTPLMVAATY GSIDVLKLII SLPEIDVNRP CGVDKTTALH CAASGGSVNA 60 IDAVKLLLES GADPNQADAN GCYPLDVIIT SPKFYDMRNS LKVLLATDVS DSMQRRQYLV 120 ELNLPDITNS IYSSDEFRMY TFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV 180 PCPDFRKGAC RRGDTCQYAH GVFESWLHPA QYRTRLCKDG TSCDRRVCFF AHKQEELRPL 240 YISTGSAVNS PRASVSTANA MDFAAAMNLF PVSPSSIPVM SPSPFTPPMS PSTNGISIMG 300 WAQQNVPTIS LPGTNPQSSR LRSSLSARDI PTEDLLELPL MSTNSLNRST RSNTIAPSSL 360 EDIFLAESSS PQFSNQPLSS SAFSPAHKST VLNQFQQQAI LSSIETYFSP RNVDNSLASF 420 GTPSSGRMSP RSMEPISPMS SRMSILVQHE MQKTQFPSLS SRALSTNAED AFVALDSTWP 480 YAGFATGSTC NLHEECQLKR SSSFDLVNNG EEPDLSWVQS LVKESPQEMN EKSAPTACSK 540 DTDRSSDSQF EQIDQSALGA WLEQMHLDQL MAQ*

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MVSRQMVLLH RTPLMVAATY GSIDVLKLII SLPEIDVNRP CGVDKTTALH CAASGGSVNA  60
IDAVKLLLES GADPNQADAN GCYPLDVIIT SPKFYDMRNS LKVLLATDVS DSMQRRQYLV  120
ELNLPDITNS IYSSDEFRMY TFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV  180
PCPDFRKGAC RRGDTCQYAH GVFESWLHPA QYRTRLCKDG TSCDRRVCFF AHKQEELRPL  240
YISTGSAVNS PRASVSTANA MDFAAAMNLF PVSPSSIPVM SPSPFTPPMS PSTNGISIMG  300
WAQQNVPTIS LPGTNPQSSR LRSSLSARDI PTEDLLELPL MSTNSLNRST RSNTIAPSSL  360
EDIFLAESSS PQFSNQPLSS SAFSPAHKST VLNQFQQQAI LSSIETYFSP RNVDNSLASF  420
GTPSSGRMSP RSMEPISPMS SRMSILVQHE MQKTQFPSLS SRALSTNAED AFVALDSTWP  480
YAGFATGSTC NLHEECQLKR SSSFDLVNNG EEPDLSWVQS LVKESPQEMN EKSAPTACSK  540
DTDRSSDSQF EQIDQSALGA WLEQMHLDQL MAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein