PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu049927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20786.8 Da PI: 6.8589 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.3e-40 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C+aCk+lrr+C+++Cvlapyfp ++p kf +h+++Gasn++kll++lpe r da+ss+vyeA+ar+rdPvyG++gvi++lq+q+++l+++la+++ Oeu049927.1 32 PCSACKILRRRCVEKCVLAPYFPPSDPLKFTTAHRVYGASNIIKLLQELPEALRVDAVSSMVYEANARLRDPVYGSAGVISQLQNQVNELQQQLAMAQ 129 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Oeu049927.1 130 AE 131 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MEHCYGDATI TKITSSSSPS PIPPPPPPVV SPCSACKILR RRCVEKCVLA PYFPPSDPLK 60 FTTAHRVYGA SNIIKLLQEL PEALRVDAVS SMVYEANARL RDPVYGSAGV ISQLQNQVNE 120 LQQQLAMAQA EIVNKQSQQA NLMALMCMEK WHKIIPHQHH SSDNDYQTNM SFLDESLGSL 180 WEHVWT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-51 | LBD family protein |