PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu049674.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 635aa MW: 69820.5 Da PI: 6.9788

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu049674.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	260	280	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + GtC Gd C +aHg Oeu049674.1 260 PCPEFKK-GTCAKGDYCEYAHG 280 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MCSGSKSEIC PFDLEMEAEF QDNKGRVFFR SCSKLLELAA TDDLGGFICE VEERGCDIDE 60 VSFWYGRSFG SKKMGFEKRT PLMIASLYGN TEVLKYIIGT GKVDVNRSCS SDGATALHCA 120 AASGSWSSVE VVKILIDASA NFSAVDANGK KPGYLIAPCI KSSSNSKRKT LEMLLNGLNG 180 EAGDDEDISP TAERKEYPID ISLPDINNGL YGTDEFRMYS FKVKPCSRAY SHDWTECPFV 240 HPGENARRRD PRKYHYTCVP CPEFKKGTCA KGDYCEYAHG VFESWLHPAQ YRTRLCKDEA 300 GCSRKVCFFA HRPEELRPLY ASTGSAMPSP KSVSANSMDL TTLSPLSLGS SSLMLPNTST 360 PPMSPSVTCS SPMGGGPWQN KVNLSLPSVQ LGGSRLKTTL SARDMELDMD LLGLEKIRTQ 420 HRQRQQLVDE MASLSSPYSR IGDLKPTNLD DIFGSLDPSL VSLLHLQHRQ NMNQLRASYP 480 SNLPSSPARK LSTFGFDSVM NSRSSAFAKR SQSFIDRNGV SHRSSLQGAA NSPTAMSSKL 540 SEWGSPDGKL EWGFNGDEVN KLRKSSSFGF RSDASAMTQL NVNEPDVSWV NSLVKDVPSA 600 SPRRYSPDQN HGGVHDTVPH WVDQLYLEQE QVVA*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MCSGSKSEIC PFDLEMEAEF QDNKGRVFFR SCSKLLELAA TDDLGGFICE VEERGCDIDE  60
VSFWYGRSFG SKKMGFEKRT PLMIASLYGN TEVLKYIIGT GKVDVNRSCS SDGATALHCA  120
AASGSWSSVE VVKILIDASA NFSAVDANGK KPGYLIAPCI KSSSNSKRKT LEMLLNGLNG  180
EAGDDEDISP TAERKEYPID ISLPDINNGL YGTDEFRMYS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKYHYTCVP CPEFKKGTCA KGDYCEYAHG VFESWLHPAQ YRTRLCKDEA  300
GCSRKVCFFA HRPEELRPLY ASTGSAMPSP KSVSANSMDL TTLSPLSLGS SSLMLPNTST  360
PPMSPSVTCS SPMGGGPWQN KVNLSLPSVQ LGGSRLKTTL SARDMELDMD LLGLEKIRTQ  420
HRQRQQLVDE MASLSSPYSR IGDLKPTNLD DIFGSLDPSL VSLLHLQHRQ NMNQLRASYP  480
SNLPSSPARK LSTFGFDSVM NSRSSAFAKR SQSFIDRNGV SHRSSLQGAA NSPTAMSSKL  540
SEWGSPDGKL EWGFNGDEVN KLRKSSSFGF RSDASAMTQL NVNEPDVSWV NSLVKDVPSA  600
SPRRYSPDQN HGGVHDTVPH WVDQLYLEQE QVVA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein