PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu049286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21020 Da PI: 6.0825 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.8e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdCv+apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ r+rdPvyG+vg i+ lq+q++ql+ +la+++ Oeu049286.1 7 PCASCKLLRRRCTKDCVFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANSRMRDPVYGCVGAISYLQNQVAQLQMQLAVAQ 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Oeu049286.1 105 AE 106 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MGSGSSPCAS CKLLRRRCTK DCVFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVHQR 60 ADAVSSLVYE ANSRMRDPVY GCVGAISYLQ NQVAQLQMQL AVAQAEILCI QMQQEPTNLQ 120 PQMVEPADEN CLLFGSNNLD HNLQQYLSFA SSSSSSSSMV QDSVKIESLC AVDPSGDQFV 180 PKRSPTYMFG M* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-64 | LBD family protein |