PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu048255.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 576aa MW: 62804.6 Da PI: 7.6438

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu048255.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	187	207	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg Oeu048255.1 187 PCPEFKK-GACAKGDSCEYAHG 207 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MIASLYGSIE VLKYLISCQK VDVNRACGSD GVTALHCAVA GGSDSLVEVV KLLIDASVDV 60 NVVDANGKKP GDLILSSMKF LNNSKRRTLE MLLKGISFEA GDPEEEEKIS RPLATKGGNE 120 KKEYPVDVPL PDINNGIYGT DEFRMYSFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK 180 NHYTCVPCPE FKKGACAKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCP RRVCFFAHKP 240 EELRPLYVST GSALPSPKSI SVNSTDFSTL SPLSLGLSSS TYPNTSTPPM SPSVTCSSPM 300 GGSIRQNKAN LMPPALQLPG SRLKTFLSAR DMELDMELLG LEKIRTQYQQ RQQLADEMAN 360 ISSPYCKVTD LKPTNLDDVF GSLDASSLSQ FQSPNGLQIH QNSNQLRASY PSNLSSSTAR 420 MPSTFGYDSS AAAVMNSRSS FAKRSQSFIN RSGGVGHRSC HSGAANSPSL MPSKLSDWSS 480 PDGKLDWGFN SEESNKFRKS ASFGIRSGNA AVSTAMAPPN VDEPDVYWVH SLVKDVPSNG 540 AGAGQYSSEQ HHGRARDIGP HWVDQLYIDH EQIVA*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MIASLYGSIE VLKYLISCQK VDVNRACGSD GVTALHCAVA GGSDSLVEVV KLLIDASVDV  60
NVVDANGKKP GDLILSSMKF LNNSKRRTLE MLLKGISFEA GDPEEEEKIS RPLATKGGNE  120
KKEYPVDVPL PDINNGIYGT DEFRMYSFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK  180
NHYTCVPCPE FKKGACAKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCP RRVCFFAHKP  240
EELRPLYVST GSALPSPKSI SVNSTDFSTL SPLSLGLSSS TYPNTSTPPM SPSVTCSSPM  300
GGSIRQNKAN LMPPALQLPG SRLKTFLSAR DMELDMELLG LEKIRTQYQQ RQQLADEMAN  360
ISSPYCKVTD LKPTNLDDVF GSLDASSLSQ FQSPNGLQIH QNSNQLRASY PSNLSSSTAR  420
MPSTFGYDSS AAAVMNSRSS FAKRSQSFIN RSGGVGHRSC HSGAANSPSL MPSKLSDWSS  480
PDGKLDWGFN SEESNKFRKS ASFGIRSGNA AVSTAMAPPN VDEPDVYWVH SLVKDVPSNG  540
AGAGQYSSEQ HHGRARDIGP HWVDQLYIDH EQIVA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-154	C3H family protein