PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu048076.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 550aa MW: 60382.9 Da PI: 8.3924 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.3 | 4.5e-12 | 25 | 51 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG +C+F+H+p Oeu048076.2 25 PGEPDCIYYLRTGTCGYGTNCRFNHPP 51 5789*********************96 PP | |||||||
2 | zf-CCCH | 19.2 | 2.1e-06 | 102 | 118 | 11 | 27 |
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 + GtCkyG +Ck++H++ Oeu048076.2 102 EIGTCKYGMTCKYHHPK 118 468************96 PP | |||||||
3 | zf-CCCH | 30.9 | 4.6e-10 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG C+yG CkF+H++ Oeu048076.2 140 KPCPYYMQTGLCQYGYVCKFHHPQ 163 69********************97 PP | |||||||
4 | zf-CCCH | 35.7 | 1.4e-11 | 264 | 289 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Crff+ +G CkyG+ Ck++H++ Oeu048076.2 264 DQPECRFFMNNGSCKYGSDCKYHHPR 289 689*********************96 PP | |||||||
5 | zf-CCCH | 30.5 | 6.4e-10 | 437 | 462 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +G CkyG++CkF H++ Oeu048076.2 437 GQPVCEYYTLYGLCKYGPSCKFDHPM 462 6799********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence |
MKSLKVESRE HKNGDTGPGS YPGRPGEPDC IYYLRTGTCG YGTNCRFNHP PNSGQSVQST 60 GELPERVGQP ECGAFKLEEA YSGFCRGFHA WSSVEMFFSR TEIGTCKYGM TCKYHHPKDR 120 RGDSSVVFNS LGLPMRQDAK PCPYYMQTGL CQYGYVCKFH HPQPISAANV PVAGHIVYGL 180 GGSVVVPSSG APSVGQLPES SLSKPTYGSS SLQSQRSFMP VVLSPAQGWN VYMGGINPVY 240 VTSGLGLPVF SGQLSASHLP ERPDQPECRF FMNNGSCKYG SDCKYHHPRE KILQSASNFI 300 GPLGLPLRPR TAAVPFPSYW FSHSCTQSLQ LTRSLKQFPN CITEYYRLDI SEEKLTNDGE 360 MFGKGIRVGG CGYFRGGSIK LQIRMEKGLR NNEISNVLTL EGSALVKPNI QAPPKNKQSR 420 DSMCECVGNR GGAWVSGQPV CEYYTLYGLC KYGPSCKFDH PMEGYSSTLP SPPIIHSPWL 480 SYQKTPSLVA LSETSSSESS KFTDWIRKGD TNHRNQDSNT RDLGDMPGRS DSRPHSSKAS 540 SEITHNESD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 7e-70 | C3H family protein |