PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu047981.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48572.1 Da PI: 8.5316 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 107 | 127 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+++++ G Ck+Gd+Ck+ H Oeu047981.3 107 KLCNHWLQ-GNCKFGDNCKYLH 127 69******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MNGGRRVYHR LGQSASSGYS DNKQQKVCYH WRQGKCSRFP CSFLHSELPG ANNGESSKRA 60 HQGFEADSSQ GGGLRRSRNS NFNNTWGRVQ GQGGGSSSNM VVKKMEKLCN HWLQGNCKFG 120 DNCKYLHQWS TGDCFSLLTP LEGHQQALTG SNVNRSKYTN RIGTRSSLPG FRSDMASQVV 180 TGIALPMGLD KLYTGSQDES VRVWDCQSGQ VVGVVNVGGA VGCMLSEGPW LFVGLTNLVK 240 WISILLTYWA LSCVADGTIL AWKFNVATNC FEPAASLKGH TLAVVTLVVG ANRLYSGSMD 300 HSIRVWNLET LQCLQTLRGH TDVVMSVLCW DQFLLSSSLD KTIKVWVATE NGTLEATYTH 360 IEEHGVLTLC GMHDSEAKPV LFCSCNDNTI RVYDLPSFSE RAKIFSKKEV RAIHIGPSGL 420 FFTGDGSGQV RVWKWSAESV AI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-164 | C3H family protein |