PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu047973.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 526aa MW: 58981.7 Da PI: 7.5156

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu047973.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.2e-09	264	284	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+++++ G Ck+Gd+Ck+ H Oeu047973.1 264 KLCNHWLQ-GNCKFGDNCKYLH 284 69****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSVTTRVSDT IIANRDKPKG KSGQTTVKRF WPSHHHRSIR QTEIVSTIED KRMKEEGIVL 60 EDEDAFQERR RFFVSESERD TIVECERLEV EEMALEEAVK RRMEERRVAT EQIVVEKIPR 120 VMSRLKVEEM ALEEAVKRRM EERRVETKQM VVEKNSGRPG DLKSISTKPK EESEDDSGCS 180 TTPTSRELKI PEKLPCSQAP RKCRPTSTCM GNRHSSKRAQ QGFEADIMGC RGAGILILII 240 QGGRVQGQGG SGSNSNMVVK KMEKLCNHWL QGNCKFGDNC KYLHQWSTGD CFSLLTPLEG 300 HQQVVTGIAL PMGLDKLYMG SQDDCQPGQV VYIVIIFLLN CFACILSLGK SYCKEQKLVI 360 RENLIEYTEY FCNPSVVGVV NVGGTAGFML SKDPCEWNIQ TSTDLSLNGP VGQVYSRVIG 420 NDMLFAGTQD GTILAWKFIV ATNCFEPAAS LKGHTLAVVT LVVGANRLYS GSMDHSIRVW 480 NLETSQCLQT LTGHTDVVMY VLCWDQFLLS SSLDKTIEVF FKKNK*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSVTTRVSDT IIANRDKPKG KSGQTTVKRF WPSHHHRSIR QTEIVSTIED KRMKEEGIVL  60
EDEDAFQERR RFFVSESERD TIVECERLEV EEMALEEAVK RRMEERRVAT EQIVVEKIPR  120
VMSRLKVEEM ALEEAVKRRM EERRVETKQM VVEKNSGRPG DLKSISTKPK EESEDDSGCS  180
TTPTSRELKI PEKLPCSQAP RKCRPTSTCM GNRHSSKRAQ QGFEADIMGC RGAGILILII  240
QGGRVQGQGG SGSNSNMVVK KMEKLCNHWL QGNCKFGDNC KYLHQWSTGD CFSLLTPLEG  300
HQQVVTGIAL PMGLDKLYMG SQDDCQPGQV VYIVIIFLLN CFACILSLGK SYCKEQKLVI  360
RENLIEYTEY FCNPSVVGVV NVGGTAGFML SKDPCEWNIQ TSTDLSLNGP VGQVYSRVIG  420
NDMLFAGTQD GTILAWKFIV ATNCFEPAAS LKGHTLAVVT LVVGANRLYS GSMDHSIRVW  480
NLETSQCLQT LTGHTDVVMY VLCWDQFLLS SSLDKTIEVF FKKNK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	3e-88	C3H family protein