PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu047468.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 406aa MW: 44225.8 Da PI: 8.7736

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu047468.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.7	3.1e-11	49	71	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++++rtGtC yG++C+++H+ Oeu047468.1 49 ADCPYYMRTGTCGYGSKCRYNHP 71 78********************8 PP
2	zf-CCCH	38.1	2.5e-12	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ Oeu047468.1 91 EPSCQYYLRTGTCKFGPSCKFNHPK 115 577********************96 PP
3	zf-CCCH	28.4	2.8e-09	136	161	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++ G+Ck+G +CkF H++ Oeu047468.1 136 GQQECSYYLQKGQCKFGRTCKFDHPE 161 6789********************96 PP
4	zf-CCCH	40	6.4e-13	287	313	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG CkyG++C+++H+p Oeu047468.1 287 PGEPDCKYYMRTGGCKYGSSCRYNHPP 313 5789*********************97 PP
5	zf-CCCH	29.2	1.6e-09	334	359	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G Ck+G +CkF H++ Oeu047468.1 334 GVQACSFYLQRGRCKFGRTCKFDHPM 359 5678********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MELYGRRSGT ESDQQQVEWA PAGQEPGLVE SMRGLNLRDG EYPERPGAAD CPYYMRTGTC 60 GYGSKCRYNH PHDRGISTGG VMRDYPERVG EPSCQYYLRT GTCKFGPSCK FNHPKNAGGS 120 LTNVPLNIYG YPLRPGQQEC SYYLQKGQCK FGRTCKFDHP EPAGLSMPDP ARTFYPTGQS 180 LSAPSEQYDS TSTTYRVARP LLHGSYVPGA YAPMLLHPGV VPMTNWNTFS GPVSPAPSPG 240 VQPSVGYRMS QLSSSAPAFT GAYTQLPSSA SPLSAGVTLE QQLPERPGEP DCKYYMRTGG 300 CKYGSSCRYN HPPNCVVSNT NCVLSPLGLP LRPGVQACSF YLQRGRCKFG RTCKFDHPMG 360 DGKYNSTSSY SEMPGLKLDL GIIRTRPSGN NSSGSVRLMF SQTVK*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MELYGRRSGT ESDQQQVEWA PAGQEPGLVE SMRGLNLRDG EYPERPGAAD CPYYMRTGTC  60
GYGSKCRYNH PHDRGISTGG VMRDYPERVG EPSCQYYLRT GTCKFGPSCK FNHPKNAGGS  120
LTNVPLNIYG YPLRPGQQEC SYYLQKGQCK FGRTCKFDHP EPAGLSMPDP ARTFYPTGQS  180
LSAPSEQYDS TSTTYRVARP LLHGSYVPGA YAPMLLHPGV VPMTNWNTFS GPVSPAPSPG  240
VQPSVGYRMS QLSSSAPAFT GAYTQLPSSA SPLSAGVTLE QQLPERPGEP DCKYYMRTGG  300
CKYGSSCRYN HPPNCVVSNT NCVLSPLGLP LRPGVQACSF YLQRGRCKFG RTCKFDHPMG  360
DGKYNSTSSY SEMPGLKLDL GIIRTRPSGN NSSGSVRLMF SQTVK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-139	C3H family protein