PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu046900.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 340aa    MW: 39228 Da    PI: 6.994
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu046900.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.4e-151451643
                 HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 +    vtf kRr+g+ KKA+ELS+LC++++ +i++++ 
  Oeu046900.1 14 HKACRVTFEKRRKGLEKKAYELSTLCGVKIGMILYGPA 51
                 55568******************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGRAKLTLTL RNNHKACRVT FEKRRKGLEK KAYELSTLCG VKIGMILYGP AEGDEPVEHT  60
IWPENREEIE NLISSYKKRS DDDCRQRNYD LSFFFKNKVK KIQEELVKTR NKNIEIKYPT  120
WDASYDNLTY DELKHFSSLL QAKIENVKSR INLMNHNLMN AQSVQENIYV HQSKLYYQQQ  180
QSLMPHGSFN MADPRLMVMP MNDGASSCSS NYIYNAEDTY GNYTYSNGGE IRGNYIGSEI  240
PVSYICNAED TYGNYTYSNG GEIRGNYINS EIPVSHGLGF EVLDNVPFSN AEMCSYLPNL  300
YPMPQYSQFP VFSSPTLQLQ AANTENYRRR HDFQLHNPM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-19M-type_MADS family protein