PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oeu046899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 333aa MW: 38493.9 Da PI: 8.0047 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 8.8e-15 | 13 | 51 | 5 | 43 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 n+ vtf kRr+g+ KKA+ELS+LC++++ +i++++ Oeu046899.1 13 NHKACRVTFEKRRKGLEKKAYELSTLCGVKIGMILYGPA 51 555668******************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence |
MGRTKLTLEL RNNHKACRVT FEKRRKGLEK KAYELSTLCG VKIGMILYGP AEGDEPVKPI 60 IWPENREEIE NLISSYKKRS DDDCRQRTYD LSFFFKNKVK KVQEELVRTR NKDIETKYPT 120 WVASYDNLTY DELKYFSSLL QAKIENVKSR INLMNQNQMN AQSVQENIYV YQPKLYYQQQ 180 QFLMPQIIDG SFNMADPRLM MMPMNDGTSS SSSNYICNDE DTFGNYTYSN GGESWGNYIG 240 SEIPVSHGLE FRVLDNVPFS NAEMCCYLPN LYPMPQYSQF PVFSSPTFNC KQLTLKIMLE 300 KMVNGSTLSP NFSGTHLLIN MGPSIFTFYS TR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-18 | M-type_MADS family protein |