PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu046510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 246aa MW: 25925.7 Da PI: 9.1079 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6e-12 | 212 | 237 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ G C +G+rC+FaHg+ Oeu046510.1 212 FKTKLCENFAK-GSCTFGERCHFAHGE 237 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MLSFVLSFRN LLLCKIILYL FASTILRSSY LPDLSVNSPS GCPFGEGCHF LHYVPGGIKA 60 VTQMLGSNPA LPAAARSPAV PSSFPDGSSP LAVKTRRYAG DRLEPTPSNL GAAASFGASA 120 TAKISVDASL AGAIIGKGGV NSKQICRLTG AKLAVRDHES DANLRNIELE GTFDQIKEAS 180 QMVRELIVSV SSNLGPPKRN PVMQGQAPAS NFKTKLCENF AKGSCTFGER CHFAHGEEEL 240 RKSGI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 7e-62 | C3H family protein |