PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu044778.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 393aa MW: 42321.8 Da PI: 8.106

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu044778.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.7e-12	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Oeu044778.1 51 DEPDCIHYLRTGFCGYGSRCRFNHPR 76 6899********************96 PP
2	zf-CCCH	39.3	1e-12	97	122	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++rtG Ck+G++Ck++H++ Oeu044778.1 97 GQPICRYYMRTGMCKFGASCKYHHPK 122 789*********************96 PP
3	zf-CCCH	34.9	2.5e-11	143	167	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++Ck++H+ Oeu044778.1 143 GEKECSYYVKTGECKFGATCKYHHP 167 7899********************9 PP
4	zf-CCCH	40.3	5.2e-13	269	295	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ +lC+++artG Ck+G++CkF H++ Oeu044778.1 269 WGAPLCSHYARTGVCKFGPSCKFDHPM 295 5679*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MERYTGSQTM EGAPSDPVAQ WAPPGGETGL EEPMWQLGLE GGPQSYPERP DEPDCIHYLR 60 TGFCGYGSRC RFNHPRDRSA AMGTLRATGG EYPERFGQPI CRYYMRTGMC KFGASCKYHH 120 PKQGIGFSGS VTLNYDGYPL RPGEKECSYY VKTGECKFGA TCKYHHPLPA GMQVPAPAPG 180 PGPVPAPAPT MYTPMQSLPI QTPQQYGVFS GNWPVARPAM LPGSYVQGTY SPMLLPPGVV 240 PVPGWTPYQY CMPSMLWMSY FVLSYKFTWG APLCSHYART GVCKFGPSCK FDHPMRTLSY 300 SPSASSLTDM PVAPYPVGST HATLAPSSSS SDLRPELISG FGRDTFSTQM SSMNNSSASV 360 GSIFSPSGHI PQSSGQQPGQ GSTFSSASSS IG*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MERYTGSQTM EGAPSDPVAQ WAPPGGETGL EEPMWQLGLE GGPQSYPERP DEPDCIHYLR  60
TGFCGYGSRC RFNHPRDRSA AMGTLRATGG EYPERFGQPI CRYYMRTGMC KFGASCKYHH  120
PKQGIGFSGS VTLNYDGYPL RPGEKECSYY VKTGECKFGA TCKYHHPLPA GMQVPAPAPG  180
PGPVPAPAPT MYTPMQSLPI QTPQQYGVFS GNWPVARPAM LPGSYVQGTY SPMLLPPGVV  240
PVPGWTPYQY CMPSMLWMSY FVLSYKFTWG APLCSHYART GVCKFGPSCK FDHPMRTLSY  300
SPSASSLTDM PVAPYPVGST HATLAPSSSS SDLRPELISG FGRDTFSTQM SSMNNSSASV  360
GSIFSPSGHI PQSSGQQPGQ GSTFSSASSS IG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-93	C3H family protein