PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu044724.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 353aa    MW: 40109.8 Da    PI: 7.8679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu044724.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.51e-07127147526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C  f++ G+C+ Gd+C FaHg
  Oeu044724.1 127 VCEEFRK-GHCSKGDNCEFAHG 147
                  7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MGSICADQHQ LKFHQSHQLY HKKSTREIDI PPRKLFSRRS ASSQATEMFM DSPKSAEDGL  60
FQRFLPYNNV DDDDADPYSS DRFRMYEFKV RKCTRSRSHD WTDCPFAHPG EKARRRDPRR  120
YHYSGTVCEE FRKGHCSKGD NCEFAHGVFE CWLHPTRYRT EACKDGKNCK RKVCFFAHST  180
KQLRILSDNS SSPLNSLVSV EKKYNYLNHC CVHCHSMIAS PTSTLMIMSH LSSPPFSPPI  240
SPGKTPEFSR RPLESSALNE FHSGGMSYKD AFTELMGNLE AMNLKEVAAS QGNLFNLDHE  300
QSQLLLSPST PNPAGSNSFF NGDVPNRDFT EGSKYNINES GPDFGWVNDL LT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-73C3H family protein