PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu043774.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 269aa    MW: 28417.2 Da    PI: 8.1049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu043774.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0975100227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC++++    Ck+Gd+C+FaHg+
  Oeu043774.1  75 KTRLCNRYSSAEGCKFGDKCHFAHGE 100
                  8***********************96 PP
2zf-CCCH36.86.8e-12235260127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +fa+ G C +G+rC+FaHg+
  Oeu043774.1 235 FKTKLCENFAK-GSCTFGERCHFAHGE 260
                  69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MFTKTILCSS YLSDLSGNSP SGCPFGEGCH FLHYVPGGIK AVTQMLGSNP ALPAAARNPV  60
VPPSFPDESS PLAVKTRLCN RYSSAEGCKF GDKCHFAHGE WELGKPSVSS YEDPRAMSGR  120
YAGDRLEQTP SNLGAAASFG ASATAKISVD ASLAGAIIGK GGVNSKQICR LTGAKLAVRD  180
HESDANLRNI ELEGTFDQIK EASQMVRELI VNVSSSLGPP KRHPVMPGQA PASNFKTKLC  240
ENFAKGSCTF GERCHFAHGE EELRKPGV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-61C3H family protein