PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu041982.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 307aa MW: 34440.1 Da PI: 6.8288

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu041982.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.9	4.5e-15	233	257	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yG++C+FaHg Oeu041982.1 233 KTELCSKWQETGTCSYGENCQFAHG 257 9***********************8 PP
2	zf-CCCH	21.6	3.7e-07	270	295	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++ +C+yG rC+F H+ Oeu041982.1 270 YKTDVCRIVLAGKICPYGHRCHFRHS 295 9********99********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MQNEINSTYD DLTTSSATSS AEKSTNAASG ANNPFLSPAS LNYLNSINSS FYSTLFPQNY 60 SPHSPSDSTS FDDGDSVATE RRLRDASCIL EYQQLYNSYT VCLAKLQEFI DEGDSLRREN 120 DAIRLSNAEI AHRLSLLISE LNPSTTIAAP QSHRQQNRLE RRNTERISLP KSISVRSSGF 180 LKMNIPSHNS TRHELVGQCR PASVQQRGRV GAGEDEGEKE SLEFEAHDQG MIKTELCSKW 240 QETGTCSYGE NCQFAHGINE LRPVIRHQRY KTDVCRIVLA GKICPYGHRC HFRHSLTEQE 300 LRHQHV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-70	C3H family protein