PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu040891.2
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 310aa    MW: 35497.9 Da    PI: 4.8018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu040891.2genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  Oeu040891.2  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSIFS 58
                 68*******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSIFSGN  60
RSMEEIMTRY VNLPEHERGK LQNQEYLQRA LGKFKYEADR TYQPANSPAS VDSQVEEMQQ  120
EILKCRCQLE HMEKRLRIYE GDSSDITTLF EAEYREQILE QVLQDQYNSP GAQTTTEMNL  180
PLETTNLSDL ASTNANNILD WLPQRDPQVQ ILNFLDSNGL LPVSEQPQRM DNILSPSLTV  240
LHAPSVLVHD HLSSGRRIED DTQRPDFDQV IDVNLSPWTD LYPTVNDPFP AAQPRYERFL  300
NSFCLSSPQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-52MIKC_MADS family protein