PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu040627.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 397aa MW: 44838.9 Da PI: 9.988

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu040627.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.4	1.4e-11	3	56	45	98
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++p+++r+d+++sl+ eA r+ +P++Ga+g++++++++++q+++e++l++ Oeu040627.1 3 SISSVPDNQRPDVFQSLLLEAAGRTVNPMNGALGLLWTGNWHVCQAAVETVLQR 56 57889********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MSSISSVPDN QRPDVFQSLL LEAAGRTVNP MNGALGLLWT GNWHVCQAAV ETVLQRGALR 60 SIPEFLSDSS LEHDNISECT DMFKLQQSKL NSPPKVKKHR LGSPGEPAKI MQFVTPRLFA 120 PRYAEVLSHH RGRDQVNPDA SYRQMYTRIP HPAVHTTYKY PSPWALFRSP KPDLTVGVYT 180 AAAATLRFRP CAPDRFLMPS VGNSLPIWSF AFPIGEDTGK PATDPEKGAF LKKNKVELQS 240 KFLLPLKKRG RMSYSREDNP MREASEEEVL HNNVTHQRPH HRRRRGERTT ILIEGMAQIA 300 AGMRDIAAQN MAMRELLMQA QGHQRPQGSY LVQEIPLSHS RGHMSRHTER PLEREGNTEA 360 TSYVQESHPS EPLLGDNFPQ EHHDQRPRRR ACFPSS*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MSSISSVPDN QRPDVFQSLL LEAAGRTVNP MNGALGLLWT GNWHVCQAAV ETVLQRGALR  60
SIPEFLSDSS LEHDNISECT DMFKLQQSKL NSPPKVKKHR LGSPGEPAKI MQFVTPRLFA  120
PRYAEVLSHH RGRDQVNPDA SYRQMYTRIP HPAVHTTYKY PSPWALFRSP KPDLTVGVYT  180
AAAATLRFRP CAPDRFLMPS VGNSLPIWSF AFPIGEDTGK PATDPEKGAF LKKNKVELQS  240
KFLLPLKKRG RMSYSREDNP MREASEEEVL HNNVTHQRPH HRRRRGERTT ILIEGMAQIA  300
AGMRDIAAQN MAMRELLMQA QGHQRPQGSY LVQEIPLSHS RGHMSRHTER PLEREGNTEA  360
TSYVQESHPS EPLLGDNFPQ EHHDQRPRRR ACFPSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	252	LKKRGRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-31	LBD family protein