PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu040544.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 645aa MW: 71329 Da PI: 8.8639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu040544.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.8e-06	476	499	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + +C++G+ C+F+H Oeu040544.2 476 REATCRQYEE-NECNRGGYCNFMHL 499 67899999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MELGQELLFQ VAPPLVNNVN SIIGPALIGK DPTDQTGLDN FMVQQLDGTQ NEWGWCKQKL 60 GANAILAVSL AVCKAGAAVL NIPLYKHIAN LAGNKKLVLP VPAFNVINGG SHAGNKLAMQ 120 ARAVIKKKYG QDATNVGDEG GFAPNIQENK EGLELLKTAI AKAGYTGKVV IGMDVAASEF 180 YGSDKTYDLN FKEEASSHYL LLLYDIFIIK SHQKANNDGS QKISGDQLKE LYKSFVSEYP 240 IVSIEDPFDQ DDWEHYAKLT GEIGAQVQIV GDDLLVTNPK RVGKAINEKT CNALLLKVNQ 300 IGSVTESIEA VKMSKKAGWG VMASHRSGET EDTFIADLSV GLATGQIKTG APCRSERLAK 360 YNQDLHNQLL GLLKKCALTL DFYEDLFEEL SKYGDLQSLN ICDNLADHMV GNVYVQFREE 420 DHAASALQNL SGRGIGVSGF GRIEHWGILS IKLGCTGERG AGRPIIVDFS PVTDFREATC 480 RQYEENECNR GGYCNFMHLK KINRELRRKL FGRSRGRHGR SRSRSRSPRP HDYEDHSRGG 540 HGSGRRNDHR HHDRGRRPRS RSPGRRGGRS RSPGGRRNRS PVRESSMERR AKIEQWNRER 600 DQAESARGNV NDNSNGFEHS ESHSDHKNIR SPGSPEQGNE SYNH*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MELGQELLFQ VAPPLVNNVN SIIGPALIGK DPTDQTGLDN FMVQQLDGTQ NEWGWCKQKL  60
GANAILAVSL AVCKAGAAVL NIPLYKHIAN LAGNKKLVLP VPAFNVINGG SHAGNKLAMQ  120
ARAVIKKKYG QDATNVGDEG GFAPNIQENK EGLELLKTAI AKAGYTGKVV IGMDVAASEF  180
YGSDKTYDLN FKEEASSHYL LLLYDIFIIK SHQKANNDGS QKISGDQLKE LYKSFVSEYP  240
IVSIEDPFDQ DDWEHYAKLT GEIGAQVQIV GDDLLVTNPK RVGKAINEKT CNALLLKVNQ  300
IGSVTESIEA VKMSKKAGWG VMASHRSGET EDTFIADLSV GLATGQIKTG APCRSERLAK  360
YNQDLHNQLL GLLKKCALTL DFYEDLFEEL SKYGDLQSLN ICDNLADHMV GNVYVQFREE  420
DHAASALQNL SGRGIGVSGF GRIEHWGILS IKLGCTGERG AGRPIIVDFS PVTDFREATC  480
RQYEENECNR GGYCNFMHLK KINRELRRKL FGRSRGRHGR SRSRSRSPRP HDYEDHSRGG  540
HGSGRRNDHR HHDRGRRPRS RSPGRRGGRS RSPGGRRNRS PVRESSMERR AKIEQWNRER  600
DQAESARGNV NDNSNGFEHS ESHSDHKNIR SPGSPEQGNE SYNH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	3e-11	C3H family protein