PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu040497.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 510aa    MW: 57256.9 Da    PI: 7.8205
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu040497.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-126387327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 +++C+++++tG CkyG++CkF+H++
  Oeu040497.1 63 QPECQYYLKTGSCKYGATCKFHHPR 87
                 799********************96 PP

2zf-CCCH35.51.7e-11152174527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C +++r+G+Ck+G++CkF+H++
  Oeu040497.1 152 ECAYYMRNGQCKFGSTCKFHHPQ 174
                  6********************97 PP

3zf-CCCH38.22.4e-12299325127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ CkF+H++
  Oeu040497.1 299 PGQPECQFYMKTGDCKFGSVCKFHHPR 325
                  5789*********************96 PP

4zf-CCCH31.14.1e-10414439227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C f++r G+Ck+G++CkF H++
  Oeu040497.1 414 GEPPCIFYSRCGICKFGPSCKFDHPM 439
                  789*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MNIRSREEME SGQYPVRESE PDCKYYIRTD PVVLLGLKDI SLITRGAIDA ARLNGEYPER  60
IGQPECQYYL KTGSCKYGAT CKFHHPRDKA GIAGRAALNV MGYPLRPDEW TSLFCMNLLP  120
EEVSIKCHPW VFTPGQLESL FNFFYCKQNE LECAYYMRNG QCKFGSTCKF HHPQPNNMMV  180
TLHGSSVYPP IHSPTTPGQL QFSLSKTTFI PSTRWQSPSG YAPLIMHQGV VSVPGWNTYK  240
SHPGTISSSE SQQSLAGNRD DHYIPHQSEA ENMGDQLHSS SMPMGYYSFH RENMFPERPG  300
QPECQFYMKT GDCKFGSVCK FHHPRERLIP VPDCVLSPIG LPLRPREFLG GGAGWGVNEF  360
TDSGLLRNMS FGYSSFRSCF DVIPWKLEIR KKSVNKREGG REAFCFYHPS WYQGEPPCIF  420
YSRCGICKFG PSCKFDHPME VLSHSPAASL PTDSPAVHRL LASSSGTGAL NFSSEGHKEV  480
GSTSNRIQYL VKNCSSEDAV QLTRLTSLE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-105C3H family protein