PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu040497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 510aa MW: 57256.9 Da PI: 7.8205 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.8 | 1.5e-12 | 63 | 87 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG CkyG++CkF+H++ Oeu040497.1 63 QPECQYYLKTGSCKYGATCKFHHPR 87 799********************96 PP | |||||||
2 | zf-CCCH | 35.5 | 1.7e-11 | 152 | 174 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r+G+Ck+G++CkF+H++ Oeu040497.1 152 ECAYYMRNGQCKFGSTCKFHHPQ 174 6********************97 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Oeu040497.1 299 PGQPECQFYMKTGDCKFGSVCKFHHPR 325 5789*********************96 PP | |||||||
4 | zf-CCCH | 31.1 | 4.1e-10 | 414 | 439 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++r G+Ck+G++CkF H++ Oeu040497.1 414 GEPPCIFYSRCGICKFGPSCKFDHPM 439 789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence |
MNIRSREEME SGQYPVRESE PDCKYYIRTD PVVLLGLKDI SLITRGAIDA ARLNGEYPER 60 IGQPECQYYL KTGSCKYGAT CKFHHPRDKA GIAGRAALNV MGYPLRPDEW TSLFCMNLLP 120 EEVSIKCHPW VFTPGQLESL FNFFYCKQNE LECAYYMRNG QCKFGSTCKF HHPQPNNMMV 180 TLHGSSVYPP IHSPTTPGQL QFSLSKTTFI PSTRWQSPSG YAPLIMHQGV VSVPGWNTYK 240 SHPGTISSSE SQQSLAGNRD DHYIPHQSEA ENMGDQLHSS SMPMGYYSFH RENMFPERPG 300 QPECQFYMKT GDCKFGSVCK FHHPRERLIP VPDCVLSPIG LPLRPREFLG GGAGWGVNEF 360 TDSGLLRNMS FGYSSFRSCF DVIPWKLEIR KKSVNKREGG REAFCFYHPS WYQGEPPCIF 420 YSRCGICKFG PSCKFDHPME VLSHSPAASL PTDSPAVHRL LASSSGTGAL NFSSEGHKEV 480 GSTSNRIQYL VKNCSSEDAV QLTRLTSLE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-105 | C3H family protein |