PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu039285.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 266aa MW: 29301.4 Da PI: 6.2996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu039285.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C dC l+p++ p++q++++ +++k++G++ +++l+++ p + r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q+++e Oeu039285.1 4 SCNGCRVLRKGCRGDCNLRPCLqwikcPESQANATLFLAKFYGRTGLINLINSGPANLRPAIFRSLLYEACGRIINPIYGSVGLMWSGNWQECQAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l ++ Oeu039285.1 102 AVLKGA 107 998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MKMSCNGCRV LRKGCRGDCN LRPCLQWIKC PESQANATLF LAKFYGRTGL INLINSGPAN 60 LRPAIFRSLL YEACGRIINP IYGSVGLMWS GNWQECQAAV EAVLKGAPLV QVSDTNDQSS 120 AIQAPPITLL QGCDIRHLSK NTATPEPIHH LKTRKRSAVE INNPLHSVVA AAELMNETEE 180 KFTITGWDCG EDYKAFVDQL KRPPSHEYDS YSVETVEPLL LNPGTGFKPE PHHTENDDIG 240 LELTLGFNPM LSNHLSTAIE LSDDR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-70	LBD family protein