PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu038368.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 501aa MW: 56546.9 Da PI: 8.1383

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu038368.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+ksF++ +L H+r+H Oeu038368.1 9 HMCKFCSKSFPSGRSLGGHMRSH 31 68********************9 PP
2	zf-C2H2	10.8	0.0015	90	108	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cgk F ++ L H++ Oeu038368.1 90 CKECGKGFQSWRALFGHMK 108 ******************7 PP
3	zf-C2H2	11	0.0013	415	437	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Oeu038368.1 415 HECPICFKVFASGQALGGHKRSH 437 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MEEDQGQKHM CKFCSKSFPS GRSLGGHMRS HLINISSDEK LIKKKKLPPL ANSKSNSENV 60 YELQENPKKK NELSKSSNDE KDSLFKDRIC KECGKGFQSW RALFGHMKCH SVNGRNISSV 120 DEESWNGSND HLKPDLDSES DNEGLTPCRR KRSDRMIKRY NTSSSLSTIA ANLSSCISEI 180 DQQEQEEVAI SLIMLSRDVS NWSIMDSVLD QSSENNSNFL ESSKISLLKS KKSKSDEEDF 240 GFKTPVIPIN GLKMSKSHVS ACGFLEKKNL DNESEVNSPK KLIKKSESEK FEIDSNKKNK 300 LSKRKCIGLY DPQLSVPENF QEKVAYFGTS DYLFCEKKPK FECTTCHKAF SSYQALGGHR 360 ASQKKFKGCC TPNGEDILNS DQISPNQTAN DKLMIDIFAM KAESEIRFKN NSKDHECPIC 420 FKVFASGQAL GGHKRSHLIR EAKSNPSIVI EKQEPIRDFL DLNLPAPVEE DLDNDRLRLK 480 PWWRGTSSLE HELLLSLLSS *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MEEDQGQKHM CKFCSKSFPS GRSLGGHMRS HLINISSDEK LIKKKKLPPL ANSKSNSENV  60
YELQENPKKK NELSKSSNDE KDSLFKDRIC KECGKGFQSW RALFGHMKCH SVNGRNISSV  120
DEESWNGSND HLKPDLDSES DNEGLTPCRR KRSDRMIKRY NTSSSLSTIA ANLSSCISEI  180
DQQEQEEVAI SLIMLSRDVS NWSIMDSVLD QSSENNSNFL ESSKISLLKS KKSKSDEEDF  240
GFKTPVIPIN GLKMSKSHVS ACGFLEKKNL DNESEVNSPK KLIKKSESEK FEIDSNKKNK  300
LSKRKCIGLY DPQLSVPENF QEKVAYFGTS DYLFCEKKPK FECTTCHKAF SSYQALGGHR  360
ASQKKFKGCC TPNGEDILNS DQISPNQTAN DKLMIDIFAM KAESEIRFKN NSKDHECPIC  420
FKVFASGQAL GGHKRSHLIR EAKSNPSIVI EKQEPIRDFL DLNLPAPVEE DLDNDRLRLK  480
PWWRGTSSLE HELLLSLLSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	70	KKKKLPPLANSKSNSENVYELQENPKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-25	C2H2 family protein