PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu035824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24551.3 Da PI: 5.9189 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.6 | 9.9e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf +eq + +fa++hk+FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lq+++ +l+a+la+l Oeu035824.1 7 PCGACKFLRRKCVEGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLAHLPVSSRCEAAVTIAYEAQARLQDPIYGCVSHIFALQKEVVNLQAQLASL 104 7*************************89********************************************************************99 PP DUF260 98 kee 100 k++ Oeu035824.1 105 KKQ 107 987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSGSGSPCGA CKFLRRKCVE GCVFAPYFSH EQGATHFAAI HKVFGASNVS KLLAHLPVSS 60 RCEAAVTIAY EAQARLQDPI YGCVSHIFAL QKEVVNLQAQ LASLKKQASQ SSLSGSDNGN 120 PSDKFYDESC SFRQDVQSWF ESCQNQDTMA QMYTNANNSV TDILYPQRGT VNATVKCENP 180 VFPEENISNS SMDSLEIQWQ RPFQNDFDDL QSVAFRYFQH S* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-57 | LBD family protein |