PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu034504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12507.3 Da PI: 8.3152 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.7 | 1.5e-08 | 2 | 26 | 26 | 50 |
HHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 26 ELSvLCdaevaviifsstgklyeys 50 ELS+LCd++++ +i++++g++ ++ Oeu034504.1 2 ELSTLCDVKACAVILGPDGQIDSWP 26 9********************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MELSTLCDVK ACAVILGPDG QIDSWPENRS EVREVINLYQ NGSRNKKRKQ KYDDRGCNKK 60 QVLGCDEGAL NPEEFLKKIN AKLDEVKKRI QFLKSKDQEF EPGIFTSPF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40220.1 | 2e-10 | M-type_MADS family protein |