PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu034245.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 263aa MW: 28673.5 Da PI: 6.3506

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu034245.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.5	1.4e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+ dC+l+p++ p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q+++e Oeu034245.1 4 SCNGCRVLRKGCSGDCTLRPCLqwiksPESQANATLFLAKFYGRAGLINLINSSPDNLRPAVFRSLLYEACGRIINPIYGSVGLMWSGNWQQCQAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l ++ Oeu034245.1 102 AVLKGA 107 998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MRMSCNGCRV LRKGCSGDCT LRPCLQWIKS PESQANATLF LAKFYGRAGL INLINSSPDN 60 LRPAVFRSLL YEACGRIINP IYGSVGLMWS GNWQQCQAAV EAVLKGAPLM QVSNTEGTSA 120 TQARSIMPLQ GGDIRHLSKN SAAEAINSIR TRKRSALQMK NPLHAVAAAA ELMNESEEKF 180 TITGWDCAED YKAFEDQLTR APSHDSYSVE TVEPSLLNQG TGFKPEPAHN ENDDIGLELT 240 LGFNPVLRNH LSTVIELSDS EV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-77	LBD family protein