PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu033784.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 690aa MW: 75420.3 Da PI: 5.9844

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu033784.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Oeu033784.1 274 PCPDFRK-GACRRGDMCEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MNVSPLNVET EDAFASLLEL AANNDIEGFK RLVDREPLCI NEVGFWYGRQ KGSKQMVFHQ 60 RTPLMVAATY GSLDVLKLII SSPEVDVNQS SGVDKCTALH CAASGGSVDG VDVVKLLLAA 120 GANPNLADAN GCCPFDVINV PPKFQEMRIS LETILRNDAT FEELNLRASA TVPNSDSPPL 180 SPSPHIGSPS SPSELVACPN SAKFASEKKE YPSDPSLPDI KNSIYATDEF RMFSFKVRPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL 300 HPAQYRTRLC KDGTSCNRRV CFFAHTQEEL RPLYVSTGSA VLSPRSTSSA ANAMDFAAAM 360 SLLPGSPSSP FAPPMSPSTD GMSNMGWSPQ NVPSLHLPGS NLQSSRLRTS LNARDFPPED 420 LSLLQDFDVQ QQQFLNELSR LSQPSANANS LNHSARSKTL IPSNLEDAFS VDNSSPRYTD 480 PSVFSPTHKS ALLNQFQQQQ QNIQSPVDPP FSPRNIDHAL LQTSFGVPSS GRMSPRSMEH 540 MSSMNSRVSM LAQCEKHQKQ FRSLSSRDLG SNAVAAVASS EDAWSSWGSS TGKPDWAVNA 600 DEFGKLKRSS SFETLNGAEE PDTSWVQSLV KESPQETKEK SASRVLCTAG LVTSSSENAN 660 LDSQIEHIDQ STALGALLEQ MKLDQLMAQ*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MNVSPLNVET EDAFASLLEL AANNDIEGFK RLVDREPLCI NEVGFWYGRQ KGSKQMVFHQ  60
RTPLMVAATY GSLDVLKLII SSPEVDVNQS SGVDKCTALH CAASGGSVDG VDVVKLLLAA  120
GANPNLADAN GCCPFDVINV PPKFQEMRIS LETILRNDAT FEELNLRASA TVPNSDSPPL  180
SPSPHIGSPS SPSELVACPN SAKFASEKKE YPSDPSLPDI KNSIYATDEF RMFSFKVRPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL  300
HPAQYRTRLC KDGTSCNRRV CFFAHTQEEL RPLYVSTGSA VLSPRSTSSA ANAMDFAAAM  360
SLLPGSPSSP FAPPMSPSTD GMSNMGWSPQ NVPSLHLPGS NLQSSRLRTS LNARDFPPED  420
LSLLQDFDVQ QQQFLNELSR LSQPSANANS LNHSARSKTL IPSNLEDAFS VDNSSPRYTD  480
PSVFSPTHKS ALLNQFQQQQ QNIQSPVDPP FSPRNIDHAL LQTSFGVPSS GRMSPRSMEH  540
MSSMNSRVSM LAQCEKHQKQ FRSLSSRDLG SNAVAAVASS EDAWSSWGSS TGKPDWAVNA  600
DEFGKLKRSS SFETLNGAEE PDTSWVQSLV KESPQETKEK SASRVLCTAG LVTSSSENAN  660
LDSQIEHIDQ STALGALLEQ MKLDQLMAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein