PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oeu033741.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 294aa MW: 30621.5 Da PI: 9.5544 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Oeu033741.2 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 27.6 | 5e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Oeu033741.2 97 KTKICNKFNTAEGCKFGDKCHFAHGE 122 89**********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 260 | 285 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ G C +GdrC+FaHg+ Oeu033741.2 260 YKTKICENFSK-GSCTFGDRCHFAHGE 285 9**********.*************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence |
MDTRKRGRGE ATFNANGGFK KSKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAQ MMNLAPAPAR TTGPQTMSNG SASTAVKTKI CNKFNTAEGC KFGDKCHFAH 120 GEWELGKPIA PSQEDLRAVG PTPSRFGGRT DPPVPSGSFG ASATAKISLD ASLAGAIIGK 180 GGVNSKQICR QTGAKLAIRD HETDTNLRNI ELEGTFEQIK EASAMVRDLI SSIGFAGGPA 240 KPAGGPAKQT GGPAAPRSNY KTKICENFSK GSCTFGDRCH FAHGEAELRQ PGA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-93 | C3H family protein |