PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu030147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 35609.1 Da PI: 8.3203 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.3e-11 | 18 | 40 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++++rtGtC yG++C+++H+ Oeu030147.1 18 ADCPYYMRTGTCGYGSKCRYNHP 40 78********************8 PP | |||||||
2 | zf-CCCH | 38.5 | 1.9e-12 | 60 | 84 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ Oeu030147.1 60 EPSCQYYLRTGTCKFGPSCKFNHPK 84 577********************96 PP | |||||||
3 | zf-CCCH | 28.8 | 2.2e-09 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++ G+Ck+G +CkF H++ Oeu030147.1 105 GQQECSYYLQKGQCKFGRTCKFDHPE 130 6789********************96 PP | |||||||
4 | zf-CCCH | 40.4 | 4.9e-13 | 256 | 282 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG CkyG++C+++H+p Oeu030147.1 256 PGEPDCKYYMRTGGCKYGSSCRYNHPP 282 5789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MRGLNLRDGE YPERPGAADC PYYMRTGTCG YGSKCRYNHP HDRGISTGGV MRDYPERVGE 60 PSCQYYLRTG TCKFGPSCKF NHPKNAGGSL TNVPLNIYGY PLRPGQQECS YYLQKGQCKF 120 GRTCKFDHPE PAGLSMPDPA RTFYPTGQSL SAPSEQYDST STTYRVARPL LHGSYVPGAY 180 APMLLHPGVV PMTNWNTFSG PVSPAPSPGV QPSVGYRMSQ LSSSAPAFTG AYTQLPSSAS 240 PLSAGVTLEQ QLPERPGEPD CKYYMRTGGC KYGSSCRYNH PPNCVVSNTN CVLSPLGLPL 300 RPCALFWLGN SNSDVLVFDF LCPSHGD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-111 | C3H family protein |