PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu029306.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28643.3 Da PI: 5.0365 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.1 | 3.4e-55 | 81 | 184 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q i+++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trt+ifdflvdi Oeu029306.3 81 QLQNFWANQyeeIDQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTEIFDFLVDI 178 89******9888999*********************************************************************************** PP NF-YC 96 vprdel 101 vpr++l Oeu029306.3 179 VPREDL 184 ***987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MDQQVNGQPQ GMGVVGSSAQ NPQSVTSYQG NQMTGPSGPA SAGSTQSSQT AGLLTSPAQM 60 AQHQLAYQHI HQQQQQQLQQ QLQNFWANQY EEIDQVTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF ARACEMFILE LTLRAWNHTE ENKRRTLQKN DIAAAITRTE IFDFLVDIVP 180 REDLKDEVFA SIPRESLPVG GPAEGLPYYY MPPQPAPPLA APGMFVGKPV DPALYAQQPH 240 PYMGQQMWPQ QPPPPPDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 6e-72 | NF-YC family protein |