PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu029235.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15287.6 Da    PI: 9.3244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu029235.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.84.9e-1213511250
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                  f +R++ i  K  ELS+LCd++++ +i++++g++  ++
  Oeu029235.1 13 AFLRRKECIKRKTMELSTLCDVKACAVILGPDGQIDSWP 51
                 6999*******************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MADADVLKAK KKAFLRRKEC IKRKTMELST LCDVKACAVI LGPDGQIDSW PENRSEVQEV  60
INLYQNGSRN KKRKQQYDDR GCNKKKVLGG DEGTSNPEEF LKKIDAKLGE VKKRIQFLRS  120
KEQEIEPDVA CCLN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.14e-13M-type_MADS family protein