PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu029070.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LBD
Protein Properties Length: 166aa    MW: 18683.4 Da    PI: 8.6894
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu029070.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-3911109199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk l+r+C+++C +apyf ++++kkfa vhk+FGasnv+k+l+++ ee+r+d+++slvyeAe+r+rdP+yG++g i +l++++++l+ +l +++
  Oeu029070.1  11 SCAACKALKRRCTPNCQFAPYFRSDERKKFAKVHKVFGASNVSKILNEVAEEQRDDTVNSLVYEAEVRLRDPIYGCIGAIASLEKKMAELEYDLMHAR 108
                  6******************************************************************************************9998887 PP

       DUF260  99 e 99 
                  +
  Oeu029070.1 109 A 109
                  6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MKSQEPRSSS SCAACKALKR RCTPNCQFAP YFRSDERKKF AKVHKVFGAS NVSKILNEVA  60
EEQRDDTVNS LVYEAEVRLR DPIYGCIGAI ASLEKKMAEL EYDLMHARAR LAFCVNQHGN  120
MATWIQDIPV SSGLGCRDGR LDLEVFKAFL VPQVRQHRAL TEHHV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-52LBD family protein