PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu028405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10266 Da PI: 10.47 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 8 | 58 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien ++ q+tfskRrng++KKA+E+ v Cd++va + fs++g++ yss Oeu028405.1 8 KKIENVTKCQITFSKRRNGLIKKANEIAVCCDVDVAFLAFSPSGRISKYSS 58 78***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence |
MGRKIDIKKI ENVTKCQITF SKRRNGLIKK ANEIAVCCDV DVAFLAFSPS GRISKYSSQR 60 RIEDVLHRYV NLSADKRLTY LSFFIHIIS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 2e-30 | MIKC_MADS family protein |