PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu026876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 24649.1 Da PI: 7.1348 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.2e-40 | 25 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l Oeu026876.1 25 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHVPANKRLEAVVTICYEAQARLRDPVYGCVSHIFALQQQVVNLQAELSYL 122 7***********************9989********************************************************************99 PP DUF260 98 kee 100 k++ Oeu026876.1 123 KAH 125 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MSGNPSGSNN GGGGSSSGSS GGGSPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK 60 VFGASNVSKL LLHVPANKRL EAVVTICYEA QARLRDPVYG CVSHIFALQQ QVVNLQAELS 120 YLKAHLAALE LPTPLPPPPT LPQPLLIPSA TLSMFDLPTA PPTYDFSSLF DPMVTMPSRQ 180 IDHHLLGATR APPEISSSAG GGGGGDLQEL ARELLYRCGP PTVEASSLPN PSKDNL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-66 | LBD family protein |