PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu026465.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25441.8 Da PI: 6.4012 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.1 | 8.6e-22 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien snrqvtfskRr g++KKA+EL++L +ae+a+i+ s +++++ Oeu026465.1 15 KKIENLSNRQVTFSKRRGGLFKKASELCILSGAEIAIIVHSLGKRVFTF 63 68***************************************99999998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MMKKTTQGRK KIEIKKIENL SNRQVTFSKR RGGLFKKASE LCILSGAEIA IIVHSLGKRV 60 FTFGHPNIDS IIERFLNGSS RNSESNSQAL VENNFPNMPD YNRHYSHISR ELEVEKKRKE 120 AIDEAKRVDD GSDGFWWDAA VDGLELDELE LYMTKLEELM KNVNIKANDL MLLHSSSSLA 180 AGAPMTGFNP TIEPCSFDDI LVNQNHIGNY DYGNCIAPFG DFGQHG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-43 | M-type_MADS family protein |