PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu026305.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 332aa MW: 35521.7 Da PI: 6.6005

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu026305.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.2e-12	17	43	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++++tG+C yG+rC+F+H++ Oeu026305.1 17 PGEPDCGYYLKTGFCGYGARCRFNHPR 43 5789*********************96 PP
2	zf-CCCH	37.1	5.2e-12	117	143	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++++tG+C yG+rC+F+H++ Oeu026305.1 117 PGEPDCGYYLKTGFCGYGARCRFNHPR 143 5789*********************96 PP
3	zf-CCCH	39.5	9.6e-13	165	189	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG CkyG++Ck++H++ Oeu026305.1 165 QPVCQYYMRTGMCKYGASCKYHHPK 189 689********************96 PP
4	zf-CCCH	23.6	9.1e-08	211	235	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C ++++ C++G+ C+F H++ Oeu026305.1 211 APVCISYSQNAVCQFGPLCRFDHPM 235 579********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MWQLGLGVEP ESYPERPGEP DCGYYLKTGF CGYGARCRFN HPRDRSVVMR ALMASGGDYP 60 ERVGQPVCQR YSGTEAMEGA PVDPMVEWGA PGGETGLEEP MWQLGLGVEP ESYPERPGEP 120 DCGYYLKTGF CGYGARCRFN HPRDRSVVMR ALMASGGDYP ERVGQPVCQY YMRTGMCKYG 180 ASCKYHHPKQ EGGSSGSLTL NYYGYPLRPG APVCISYSQN AVCQFGPLCR FDHPMKKLSS 240 SPSASSLTDM PVAPYPVGSS IATLAPSSSS SSDLRPEVIA GYRGDSPSPQ MSSISSTGAS 300 VGSIYSQSGP VSHSSIQQSG QGIGGEVHTS N*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	9e-61	C3H family protein