PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu025824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25552.3 Da PI: 6.7711 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.7e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf +eq +++f ++hk+FGasnv+kll++lp +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++la+l Oeu025824.1 7 PCGACKFLRRKCVRGCVFAPYFSHEQgAAHFSAIHKVFGASNVSKLLSHLPVCDRYEAAVTISYEAQARVQDPIYGCVSHIFALQQQVFNLQVQLASL 104 7*************************89********************************************************************99 PP DUF260 98 kee 100 ke+ Oeu025824.1 105 KEQ 107 987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MKGSGSPCGA CKFLRRKCVR GCVFAPYFSH EQGAAHFSAI HKVFGASNVS KLLSHLPVCD 60 RYEAAVTISY EAQARVQDPI YGCVSHIFAL QQQVFNLQVQ LASLKEQAAQ SILNSSKNVD 120 PNQKFYSGTN SFSQDVKSWF QSSQNQGLLS QLYANSSSTN IREMAPYFES STMNDLNPLG 180 NNENSAFLEK NTSFGSRDSL ELQSNDREWP FQDDGDDLQS VTFRYIQHS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 9e-55 | LBD family protein |