PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu025658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22819.2 Da PI: 7.9317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 1.9e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ a+q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++++++++++q++++ Oeu025658.1 2 SCNGCRVLRKGCSENCILRPCLqwiesSAAQGHATVFVAKFFGRAGLMSFISAVPENQRPAVFRSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQEAVQ 99 6*********************9999888999***************************************************************999 PP DUF260 94 lal 96 ++l Oeu025658.1 100 TVL 102 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIESSA AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PAVFRSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQEAVQT VLCGGALRPI PEFTNGDSVD 120 CTDMYNLQDP GLNSRSKVLN RHRLPDEPSK ISQLADLDIS LMPSVWSEKI RALPEKRRLG 180 SPMNSEESVT TVCGDQQASE PKLLNLFK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-76 | LBD family protein |